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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 261ATAC-seq
  • 186DNase-seq
  • 5FAIRE-seq
  • 1snATAC-seq
Assay category
  • 1403Transcription
  • 1305DNA binding
  • 453DNA accessibility
  • 273D chromatin structure
  • 19DNA methylation
Date released
  • 164June, 2019
  • 45February, 2023
  • 45May, 2020
  • 39May, 2022
  • 26November, 2019
  • 22February, 2021
  • 18May, 2021
  • 18October, 2019
  • 14September, 2018
  • 12August, 2021
  • 10August, 2017
  • 10November, 2018
  • 7July, 2019
  • 7October, 2017
  • 5September, 2017
  • 4March, 2020
  • 3January, 2018
  • 2March, 2019
  • 2November, 2020
Available data
  • 370bed narrowPeak
  • 363bam
  • 315bigWig
  • 218bigBed narrowPeak
  • 186bed bed3+
  • 184bed broadPeak
  • 183bigBed broadPeak
  • 63fastq
  • 12bed bed3
  • 7bed bedgraph
  • 4txt
  • 2tsv
  • 1tar
Organism
  • 453Homo sapiens
Biosample type
  • 288tissue
  • 107primary cell
  • 43in vitro differentiated cells
  • 15cell line
Organ
  • 79pancreas
  • 73kidney
  • 50epithelium
  • 44limb
  • 39heart
  • 35musculature of body
  • 33connective tissue
  • 31eye
  • 28liver
  • 24brain
  • 22vasculature
  • 20blood vessel
  • 18ureter
  • 14artery
  • 12bone element
  • 12skeleton
  • 8adipose tissue
  • 3nerve
  • 3vein
  • 2spleen
  • 1blood
  • 1bodily fluid
Project
  • 453AMP
Genome assembly (visualization)
  • 453hg19
  • 441GRCh38
Lab
  • 402AMP-T2D consortium
  • 23Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 5Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 24inconsistent ontology term
  • 1audit script error
  • 1inconsistent replicate
BIOSAMPLE
ASSAY

453 results

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Clear Filters
ATAC-seq
DNase-seq
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans4211
liver202
retina153
muscle of arm17
heart16
primary cell
monocyte15
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
pancreatic ductal cell4
in vitro differentiated cells
neural progenitor cell10
adipocyte81
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
smooth muscle cell of the coronary artery8
EndoC_BH13
GM128781
HepG21
Panc11
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