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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
ATAC-seq
209
DNase-seq
55
snATAC-seq
5
FAIRE-seq
Assay category
1591
Transcription
1186
DNA binding
729
DNA accessibility
96
DNA methylation
22
3D chromatin structure
Date released
187
June, 2019
100
May, 2020
98
May, 2022
93
February, 2023
70
August, 2021
27
October, 2019
20
November, 2019
16
January, 2021
14
September, 2018
13
May, 2021
11
May, 2023
10
April, 2020
10
August, 2017
10
November, 2018
9
February, 2021
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
3
September, 2020
2
January, 2018
2
March, 2020
2
November, 2020
Available data
458
bed narrowPeak
359
bam
332
bigWig
236
bigBed narrowPeak
206
bed broadPeak
204
bigBed broadPeak
203
bed bed3+
74
fastq
64
xls
60
zippedFastqFolder
13
tsv
6
bed bed3
1
tar
Organism
728
Homo sapiens
Biosample type
468
tissue
261
primary cell
40
in vitro differentiated cells
31
cell line
Organ
162
kidney
152
pancreas
103
epithelium
69
heart
50
vasculature
48
blood vessel
44
limb
41
artery
37
brain
34
musculature of body
32
eye
28
liver
18
ureter
16
connective tissue
12
bone element
12
skeleton
10
lung
8
adipose tissue
8
blood
8
bodily fluid
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
620
AMP
70
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
411
GRCh38
394
hg19
Lab
496
AMP-T2D consortium
81
Katalin Susztak, Upenn
70
Klaus Kaestner, Upenn
47
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
audit script error
17
inconsistent ontology term
audit.ERROR.category!
audit script error
files.file_type!
txt
BIOSAMPLE
ASSAY
729 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
6
1
coronary artery
36
2
liver
20
2
heart
18
+ See 60 more…
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
Langerhans cell
21
+ See 58 more…
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