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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ATAC-seq
10
snATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
479
Transcription
218
DNA binding
172
DNA accessibility
53
DNA methylation
6
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
March, 2020
4
October, 2019
3
November, 2018
3
September, 2020
Available data
75
bam
74
bed narrowPeak
61
fastq
51
bigWig
39
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
172
Homo sapiens
Biosample type
81
tissue
71
primary cell
20
cell line
Organ
172
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
34
connective tissue
34
musculature of body
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
vein
2
spleen
1
pituitary gland
1
skin of body
Project
102
AMP
49
HPAP
21
T1D
Genome assembly (visualization)
79
hg19
67
GRCh38
Lab
79
AMP-T2D consortium
49
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
lab.title!
Anna Gloyn, Oxford
organ_slims!
vein
BIOSAMPLE
ASSAY
172 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
58
6
1
1
body of pancreas
4
4
pancreas
4
2
1
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
19
Panc1
1
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