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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ATAC-seq
8
snATAC-seq
6
DNase-seq
Assay category
585
DNA binding
193
Transcription
38
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
20
May, 2022
8
January, 2021
3
November, 2018
2
August, 2017
2
June, 2019
1
February, 2021
1
January, 2018
1
October, 2019
Available data
28
bed narrowPeak
27
bigWig
8
bam
6
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
fastq
1
bed bed3
Organism
38
Homo sapiens
Biosample type
25
tissue
11
primary cell
2
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
0
lymph node
Project
30
AMP
8
T1D
Genome assembly (visualization)
29
hg19
8
GRCh38
Lab
20
Karen Mohlke, UNC
10
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
liver
20
2
right lobe of liver
1
2
primary cell
peripheral blood mononuclear cell
8
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
hepatocyte
1
cell line
GM12878
1
HepG2
1
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