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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
11
snATAC-seq
5
DNase-seq
Assay category
193
Transcription
93
DNA accessibility
56
DNA binding
43
DNA methylation
8
3D chromatin structure
Date released
39
May, 2022
19
November, 2019
13
February, 2023
8
January, 2021
4
June, 2019
4
October, 2019
3
March, 2019
2
March, 2020
1
August, 2022
Available data
74
bam
73
bed narrowPeak
fastq
49
bigWig
39
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
1
tsv
Organism
93
Homo sapiens
Biosample type
53
tissue
39
primary cell
1
cell line
Organ
162
kidney
93
pancreas
76
heart
70
epithelium
57
vasculature
56
blood vessel
49
artery
43
limb
34
brain
34
musculature of body
32
eye
26
connective tissue
24
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
4
adipose tissue
3
nerve
3
vein
1
pituitary gland
1
skin of body
Project
39
HPAP
33
AMP
21
T1D
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
39
Klaus Kaestner, Upenn
30
AMP-T2D consortium
21
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
audit.ERROR.category!!
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
93 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
islet of Langerhans
38
7
pancreas
4
2
body of pancreas
2
primary cell
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
cell line
Panc1
1
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