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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
DNase-seq
166
ATAC-seq
22
snATAC-seq
2
FAIRE-seq
Assay category
967
Transcription
685
DNA binding
357
DNA accessibility
25
DNA methylation
14
3D chromatin structure
Date released
162
June, 2019
81
February, 2023
August, 2021
21
May, 2022
20
October, 2019
19
November, 2019
11
May, 2023
10
April, 2020
8
February, 2021
8
January, 2021
8
July, 2019
3
March, 2019
2
January, 2018
2
March, 2020
1
August, 2017
1
August, 2022
Available data
323
bed narrowPeak
243
bam
223
bigWig
183
bigBed narrowPeak
177
bed broadPeak
176
bed bed3+
175
bigBed broadPeak
fastq
5
bed bed3
1
tsv
1
txt
Organism
356
Homo sapiens
Biosample type
357
tissue
213
primary cell
20
in vitro differentiated cells
12
cell line
Organ
80
kidney
66
heart
53
pancreas
43
blood vessel
43
limb
43
vasculature
41
artery
33
musculature of body
31
eye
29
brain
21
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
4
adipose tissue
4
connective tissue
3
nerve
1
pituitary gland
1
skin of body
Project
326
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
249
GRCh38
247
hg19
Lab
292
AMP-T2D consortium
21
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
11
Katalin Susztak, Upenn
10
Xin Sun, UCSD
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
2
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
files.file_type!
fastq
month_released!
August, 2021
BIOSAMPLE
ASSAY
357 results
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DNase-seq
ATAC-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
48
7
coronary artery
2
36
kidney
13
11
1
liver
20
heart
18
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