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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
18
DNase-seq
1
FAIRE-seq
Assay category
166
Transcription
104
DNA binding
102
DNA accessibility
41
DNA methylation
7
3D chromatin structure
Date released
39
May, 2022
14
September, 2018
13
June, 2019
12
February, 2023
7
August, 2020
6
October, 2019
5
September, 2017
3
August, 2017
3
September, 2020
Available data
51
bed narrowPeak
49
bigWig
39
bam
39
bigBed narrowPeak
39
zippedFastqFolder
32
fastq
15
bed bed3+
15
bed broadPeak
15
bigBed broadPeak
1
tar
Organism
102
Homo sapiens
Biosample type
89
primary cell
12
tissue
1
cell line
Organ
162
kidney
154
pancreas
102
epithelium
68
heart
49
vasculature
48
blood vessel
41
artery
37
brain
37
limb
34
musculature of body
32
eye
27
liver
25
connective tissue
18
ureter
10
lung
9
blood
9
bodily fluid
7
adipose tissue
4
bone element
4
skeleton
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
53
AMP
49
HPAP
Genome assembly (visualization)
48
GRCh38
45
hg19
Lab
53
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
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audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bedMethyl
month_released!
February, 2021
BIOSAMPLE
ASSAY
102 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
endothelial cell of umbilical vein
2
1
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tissue
pigmented layer of retina
12
cell line
glomerular visceral epithelial cell
1
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