Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ATAC-seq
176
DNase-seq
28
snATAC-seq
4
FAIRE-seq
Assay category
828
Transcription
820
DNA binding
462
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Date released
162
June, 2019
80
February, 2023
70
August, 2021
39
May, 2022
19
November, 2019
19
October, 2019
11
May, 2023
10
April, 2020
9
November, 2018
8
February, 2021
8
January, 2021
8
July, 2019
7
October, 2017
4
August, 2017
4
March, 2019
2
March, 2020
1
August, 2022
1
January, 2018
Available data
383
bed narrowPeak
240
bam
218
bigWig
180
bigBed narrowPeak
176
bed broadPeak
175
bed bed3+
174
bigBed broadPeak
64
xls
38
fastq
5
bed bed3
1
tsv
1
txt
Organism
461
Homo sapiens
Biosample type
462
tissue
288
primary cell
43
in vitro differentiated cells
31
cell line
Organ
150
kidney
82
pancreas
66
heart
44
limb
43
blood vessel
43
vasculature
41
artery
34
musculature of body
32
brain
31
eye
25
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
adipose tissue
8
connective tissue
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
431
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
330
GRCh38
280
hg19
Lab
307
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
1
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
462 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 56 more…
See all biosamples
Download