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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
ATAC-seq
212
DNase-seq
36
snATAC-seq
5
FAIRE-seq
Assay category
1871
DNA binding
1741
Transcription
734
DNA accessibility
50
DNA methylation
31
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
82
August, 2021
39
May, 2022
34
May, 2021
33
October, 2019
26
November, 2019
22
February, 2021
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
5
September, 2017
4
March, 2020
3
January, 2018
3
March, 2019
2
November, 2020
1
August, 2022
Available data
492
bed narrowPeak
389
bam
340
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
65
fastq
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
733
Homo sapiens
Biosample type
469
tissue
191
primary cell
43
in vitro differentiated cells
31
cell line
Organ
163
kidney
123
pancreas
77
heart
74
epithelium
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
695
AMP
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
453
hg19
431
GRCh38
Lab
562
AMP-T2D consortium
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
2
audit script error
1
inconsistent replicate
award.project!
HPAP
lab.title!
Maike Sander, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
734 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
67
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 60 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
peripheral blood mononuclear cell
8
+ See 57 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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