Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
350
ATAC-seq
207
DNase-seq
66
snATAC-seq
5
FAIRE-seq
Assay category
1530
DNA binding
1511
Transcription
628
DNA accessibility
96
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Date released
183
June, 2019
May, 2020
99
May, 2022
70
August, 2021
53
February, 2023
45
February, 2021
29
May, 2021
28
October, 2019
21
November, 2019
14
September, 2018
11
May, 2023
10
April, 2020
10
August, 2017
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
439
bed narrowPeak
322
bam
288
bigWig
234
bigBed narrowPeak
203
bed broadPeak
201
bed bed3+
201
bigBed broadPeak
101
fastq
64
xls
60
zippedFastqFolder
14
tsv
7
bed bed3
1
tar
1
txt
Organism
627
Homo sapiens
Biosample type
418
tissue
179
primary cell
in vitro differentiated cells
31
cell line
Organ
163
kidney
152
pancreas
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
eye
29
liver
18
ureter
16
connective tissue
12
bone element
12
skeleton
10
lung
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
521
AMP
97
HPAP
T1D
10
LungMap
Genome assembly (visualization)
419
GRCh38
334
hg19
Lab
397
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
32
inconsistent ontology term
29
audit script error
1
inconsistent replicate
award.project!
T1D
biosample_type!
in vitro differentiated cells
month_released!
May, 2020
organ_slims!
eye
BIOSAMPLE
ASSAY
628 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
56
1
1
1
coronary artery
36
2
liver
20
2
heart
18
+ See 58 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
monocyte
13
pancreatic acinar cell
9
+ See 29 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
See all biosamples
Download