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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ATAC-seq
8
DNase-seq
2
FAIRE-seq
1
snATAC-seq
Assay category
470
Transcription
214
DNA binding
152
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
March, 2020
4
October, 2019
3
November, 2018
3
September, 2020
1
August, 2022
Available data
75
bam
74
bed narrowPeak
61
fastq
51
bigWig
39
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
152
Homo sapiens
Biosample type
71
primary cell
61
tissue
20
cell line
Organ
163
kidney
152
pancreas
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
skin of body
Project
103
AMP
49
HPAP
T1D
Genome assembly (visualization)
79
hg19
67
GRCh38
Lab
80
AMP-T2D consortium
49
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
award.project!
T1D
organ_slims!
skin of body
BIOSAMPLE
ASSAY
152 results
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ATAC-seq
DNase-seq
FAIRE-seq
snATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
47
1
1
1
body of pancreas
4
4
pancreas
2
1
cell line
EndoC_BH1
19
Panc1
1
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