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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
520
ATAC-seq
212
DNase-seq
67
snATAC-seq
5
FAIRE-seq
Assay category
1813
Transcription
1783
DNA binding
804
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
100
May, 2020
99
May, 2022
92
February, 2023
82
August, 2021
49
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
1
July, 2025
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
210
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
15
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
1
tbi
Organism
802
Homo sapiens
Biosample type
450
tissue
280
primary cell
43
in vitro differentiated cells
31
cell line
Organ
163
kidney
152
pancreas
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
36
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
697
AMP
97
HPAP
T1D
10
LungMap
Genome assembly (visualization)
453
hg19
442
GRCh38
Lab
562
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
2
Stephen Parker, UMich
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
46
inconsistent ontology term
29
audit script error
1
inconsistent replicate
award.project!
T1D
BIOSAMPLE
ASSAY
804 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
57
1
1
1
coronary artery
36
2
liver
20
2
heart
18
retina
15
3
muscle of arm
17
brain
1
14
muscle of leg
13
pigmented layer of retina
12
renal cortex interstitium
11
lung
10
renal pelvis
10
right kidney
10
left kidney
9
body of pancreas
4
4
heart left ventricle
2
3
left renal cortex interstitium
4
left renal pelvis
4
right renal pelvis
4
adipose tissue
3
frontal cortex
2
1
omental fat pad
1
2
pancreas
2
1
right atrium auricular region
1
2
right lobe of liver
1
2
right renal cortex interstitium
3
skeletal muscle tissue
1
2
tibial artery
1
2
tibial nerve
1
2
cerebellum (Hemisphere)
1
1
spleen
1
1
Ammon's horn
1
acetabular part of hip bone
1
adipose tissue(adipose white tissue)
1
ascending aorta
1
caudate nucleus
1
cerebellar cortex
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
forelimb muscle
1
globus pallidus
1
heart right ventricle
1
hindlimb muscle
1
ilium
1
inferior parietal cortex
1
ischium
1
left cardiac atrium
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
occipital lobe
1
pons
1
posterior cingulate cortex
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pubis
1
putamen
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
thoracic aorta
1
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic acinar cell
9
pancreatic ductal cell
4
cardiac fibroblast
3
endothelial cell of umbilical vein
2
1
gabaergic neuron
3
glutamatergic neuron
3
kidney tubule cell
3
microglial cell/astrocyte
3
oligodendrocyte
3
osteoblast
2
1
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
regulatory T cell
2
skeletal muscle myoblast
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
hepatic stellate cell
1
hepatocyte
1
immature natural killer cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
myeloid dendritic cell
1
natural killer cell
1
plasma cell
1
plasmacytoid dendritic cell
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
preadipocyte
1
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
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