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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
443
ATAC-seq
202
DNase-seq
8
snATAC-seq
2
FAIRE-seq
Assay category
1541
DNA binding
1481
Transcription
655
DNA accessibility
23
DNA methylation
17
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
100
May, 2020
92
February, 2023
82
August, 2021
39
May, 2022
34
May, 2021
October, 2019
26
November, 2019
22
February, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
November, 2018
July, 2019
8
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
2
November, 2020
1
August, 2022
Available data
470
bed narrowPeak
366
bam
318
bigWig
227
bigBed narrowPeak
202
bed bed3+
201
bed broadPeak
199
bigBed broadPeak
65
fastq
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
655
Homo sapiens
Biosample type
411
tissue
176
primary cell
39
in vitro differentiated cells
29
cell line
Organ
159
kidney
99
pancreas
73
heart
67
epithelium
50
vasculature
48
blood vessel
45
artery
38
limb
35
musculature of body
34
brain
31
connective tissue
31
eye
28
liver
18
ureter
12
bone element
12
skeleton
7
adipose tissue
2
spleen
1
blood
1
bodily fluid
Project
655
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
428
hg19
411
GRCh38
Lab
521
AMP-T2D consortium
81
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
2
audit script error
1
inconsistent replicate
month_released!
July, 2019
October, 2019
September, 2023
BIOSAMPLE
ASSAY
655 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
islet of Langerhans
44
1
1
1
coronary artery
35
2
liver
20
2
heart
18
+ See 55 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic beta cell
7
+ See 53 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
6
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 5 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
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