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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 142ATAC-seq
  • 83snATAC-seq
Assay category
  • 412Transcription
  • 225DNA accessibility
  • 106DNA binding
  • 47DNA methylation
  • 83D chromatin structure
  • 1DNA sequencing
Date released
  • 72August, 2021
  • 60May, 2022
  • 27February, 2021
  • 16February, 2023
  • 16January, 2021
  • 11May, 2023
  • 10April, 2020
  • 7August, 2020
  • 3September, 2020
  • 1July, 2025
  • 1March, 2019
  • 1October, 2017
Available data
  • 68bed narrowPeak
  • 64xls
  • 60zippedFastqFolder
  • 38fastq
  • 16bigWig
  • 3bed bedgraph
  • 3txt
  • 1bed bed3+
  • 1bed broadPeak
  • 1tbi
  • 1tsv
Organism
  • 223Homo sapiens
Biosample type
  • 115tissue
  • 105primary cell
  • 5in vitro differentiated cells
Organ
  • 81kidney
  • 72pancreas
  • 49epithelium
  • 10lung
  • 8blood
  • 8bodily fluid
  • 2connective tissue
  • 1musculature of body
Project
  • 97HPAP
  • 89AMP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 88GRCh38
  • 7hg19
Lab
  • 97Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 29Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 5Struan F.A. Grant, CHOP
  • 2Stephen Parker, UMich
  • 1Bing Ren, UCSD
Audit category:
  • 27audit script error
  • 1inconsistent ontology term
award.rfa!
  • AMP
BIOSAMPLE
ASSAY

225 results

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Clear Filters
ATAC-seq
snATAC-seq
tissue
kidney756
islet of Langerhans136
lung10
pancreas4
skeletal muscle tissue1
primary cell
Langerhans cell48
pancreatic alpha cell29
pancreatic beta cell16
peripheral blood mononuclear cell8
pancreatic acinar cell4
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)1
adipocyte1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
osteoblast1
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