Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
ATAC-seq
212
DNase-seq
5
FAIRE-seq
2
snATAC-seq
Assay category
1765
DNA binding
1506
Transcription
608
DNA accessibility
50
DNA methylation
26
3D chromatin structure
Date released
187
June, 2019
100
May, 2020
89
February, 2023
39
May, 2022
34
May, 2021
33
October, 2019
26
November, 2019
22
February, 2021
14
September, 2018
11
August, 2017
10
August, 2021
10
November, 2018
8
July, 2019
7
October, 2017
5
September, 2017
4
March, 2020
3
January, 2018
3
March, 2019
2
November, 2020
1
August, 2022
Available data
424
bed narrowPeak
389
bam
334
bigWig
241
bigBed narrowPeak
209
bed bed3+
207
bed broadPeak
206
bigBed broadPeak
64
fastq
14
tsv
12
bed bed3
4
bed bedgraph
1
tar
1
txt
Organism
608
Homo sapiens
Biosample type
356
tissue
183
primary cell
38
in vitro differentiated cells
31
cell line
Organ
101
pancreas
82
kidney
77
heart
74
epithelium
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
32
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
608
AMP
Genome assembly (visualization)
446
hg19
354
GRCh38
Lab
562
AMP-T2D consortium
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
45
inconsistent ontology term
2
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
608 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
55
1
1
1
coronary artery
36
2
liver
20
2
heart
18
retina
15
3
+ See 59 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic beta cell
7
+ See 56 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
embryonic stem cell
5
+ See 4 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
See all biosamples
Download