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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ATAC-seq
6
DNase-seq
Assay category
179
Transcription
174
DNA binding
28
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Date released
20
May, 2022
3
November, 2018
2
August, 2017
2
June, 2019
1
October, 2019
Available data
27
bed narrowPeak
26
bigWig
7
bam
6
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
fastq
Organism
28
Homo sapiens
Biosample type
25
tissue
3
primary cell
cell line
Organ
162
kidney
153
pancreas
103
epithelium
69
heart
50
vasculature
48
blood vessel
44
limb
41
artery
37
brain
35
musculature of body
34
connective tissue
32
eye
28
liver
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
8
blood
8
bodily fluid
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
28
AMP
Genome assembly (visualization)
27
hg19
7
GRCh38
Lab
20
Karen Mohlke, UNC
8
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
organ_slims!
ureter
BIOSAMPLE
ASSAY
28 results
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ATAC-seq
DNase-seq
tissue
liver
20
2
right lobe of liver
1
2
primary cell
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
hepatocyte
1
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