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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 502ATAC-seq
  • 210DNase-seq
  • 84snATAC-seq
  • 5FAIRE-seq
Assay category
  • 1803Transcription
  • 1387DNA binding
  • 801DNA accessibility
  • 96DNA methylation
  • 303D chromatin structure
Date released
  • 187June, 2019
  • 105February, 2023
  • 100May, 2020
  • 99May, 2022
  • 82August, 2021
  • 40February, 2021
  • 31October, 2019
  • 25November, 2019
  • 18May, 2021
  • 16January, 2021
  • 14September, 2018
  • 11August, 2017
  • 11May, 2023
  • 10April, 2020
  • 10November, 2018
  • 8July, 2019
  • 8October, 2017
  • 7August, 2020
  • 5September, 2017
  • 4March, 2019
  • 3September, 2020
  • 2January, 2018
  • 2March, 2020
  • 2November, 2020
  • 1August, 2022
Available data
  • 480bed narrowPeak
  • 377bam
  • 345bigWig
  • 239bigBed narrowPeak
  • 208bed bed3+
  • 207bed broadPeak
  • 205bigBed broadPeak
  • 102fastq
  • 64xls
  • 60zippedFastqFolder
  • 13tsv
  • 11bed bed3
  • 7bed bedgraph
  • 4txt
  • 1tar
Organism
  • 800Homo sapiens
Biosample type
  • 470tissue
  • 288primary cell
  • 43in vitro differentiated cells
  • cell line
Organ
  • 162kidney
  • 153pancreas
  • 103epithelium
  • 69heart
  • 50vasculature
  • 48blood vessel
  • 44limb
  • 41artery
  • 37brain
  • 35musculature of body
  • 34connective tissue
  • 32eye
  • 28liver
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 8adipose tissue
  • 8blood
  • 8bodily fluid
  • 3nerve
  • 3vein
  • 2spleen
  • 1pituitary gland
  • 1skin of body
Project
  • 665AMP
  • 97HPAP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 438hg19
  • 429GRCh38
Lab
  • 531AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 52Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 5Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 29audit script error
  • 27inconsistent ontology term
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

801 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney751361
islet of Langerhans68171
coronary artery362
liver202
heart18
primary cell
Langerhans cell48
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
in vitro differentiated cells
neural progenitor cell10
adipocyte81
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
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