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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
314
ATAC-seq
84
snATAC-seq
1
DNase-seq
Assay category
487
Transcription
399
DNA accessibility
218
DNA binding
79
DNA methylation
27
3D chromatin structure
1
DNA sequencing
Date released
93
February, 2023
81
May, 2022
70
August, 2021
55
May, 2020
27
February, 2021
16
January, 2021
16
May, 2021
October, 2019
11
May, 2023
10
April, 2020
7
August, 2020
4
March, 2020
January, 2018
3
March, 2019
3
September, 2020
1
August, 2017
1
August, 2022
1
October, 2017
Available data
457
bed narrowPeak
bam
322
bigWig
228
bigBed narrowPeak
200
bed broadPeak
198
bed bed3+
198
bigBed broadPeak
101
fastq
64
xls
60
zippedFastqFolder
14
tsv
7
bed bed3
1
txt
Organism
398
Homo sapiens
Biosample type
209
tissue
172
primary cell
in vitro differentiated cells
18
cell line
Organ
95
pancreas
81
kidney
79
epithelium
35
artery
35
blood vessel
35
heart
35
vasculature
27
eye
21
liver
10
lung
8
blood
8
bodily fluid
4
bone element
4
skeleton
1
adipose tissue
1
brain
1
connective tissue
1
musculature of body
Project
263
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
123
GRCh38
61
hg19
Lab
158
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
29
audit script error
24
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
bam
month_released!
January, 2018
October, 2019
BIOSAMPLE
ASSAY
399 results
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ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
coronary artery
35
islet of Langerhans
17
7
liver
20
retina
15
+ See 11 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
+ See 7 more…
cell line
EndoC_BH1
18
See all biosamples
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