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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
421
ATAC-seq
171
DNase-seq
84
snATAC-seq
4
FAIRE-seq
Assay category
1589
Transcription
1302
DNA binding
680
DNA accessibility
87
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Date released
157
June, 2019
100
May, 2020
99
May, 2022
70
August, 2021
58
February, 2023
37
February, 2021
29
May, 2021
October, 2019
21
November, 2019
16
January, 2021
14
September, 2018
11
May, 2023
10
April, 2020
10
August, 2017
10
November, 2018
8
October, 2017
7
August, 2020
5
September, 2017
4
July, 2019
4
March, 2019
4
March, 2020
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
380
bed narrowPeak
316
bam
288
bigWig
198
bigBed narrowPeak
170
bed broadPeak
168
bed bed3+
168
bigBed broadPeak
101
fastq
64
xls
60
zippedFastqFolder
14
tsv
7
bed bed3
1
txt
Organism
679
Homo sapiens
Biosample type
382
tissue
278
primary cell
in vitro differentiated cells
20
cell line
Organ
169
pancreas
160
kidney
116
epithelium
heart
52
vasculature
50
blood vessel
46
artery
38
limb
36
brain
34
musculature of body
31
eye
28
liver
18
ureter
14
connective tissue
12
bone element
12
skeleton
10
lung
8
blood
8
bodily fluid
6
adipose tissue
2
spleen
Project
544
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
354
hg19
334
GRCh38
Lab
420
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
47
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
33
inconsistent ontology term
29
audit script error
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
month_released!
January, 2018
October, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
680 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
55
1
7
1
liver
20
2
retina
15
3
muscle of arm
17
+ See 52 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 54 more…
cell line
EndoC_BH1
19
HepG2
1
See all biosamples
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