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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
22
snATAC-seq
Assay category
103
DNA accessibility
73
Transcription
41
DNA methylation
8
3D chromatin structure
3
DNA binding
Date released
187
June, 2019
100
May, 2020
99
May, 2022
93
February, 2023
70
August, 2021
45
February, 2021
29
May, 2021
29
October, 2019
21
November, 2019
16
January, 2021
14
September, 2018
11
May, 2023
10
April, 2020
10
August, 2017
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
60
zippedFastqFolder
38
bed narrowPeak
24
bigWig
18
bam
18
fastq
2
tsv
1
bed bed3+
1
txt
Organism
103
Homo sapiens
Biosample type
60
primary cell
41
tissue
2
cell line
Organ
61
pancreas
41
epithelium
20
liver
1
musculature of body
Project
60
HPAP
43
AMP
Genome assembly (visualization)
43
hg19
Lab
60
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
5
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
103 results
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Clear Filters
ATAC-seq
snATAC-seq
primary cell
pancreatic alpha cell
22
Langerhans cell
21
pancreatic beta cell
13
pancreatic acinar cell
4
tissue
islet of Langerhans
20
liver
20
skeletal muscle tissue
1
cell line
EndoC_BH1
2
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