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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
15
DNase-seq
Assay category
198
Transcription
118
DNA accessibility
87
DNA binding
53
DNA methylation
4
3D chromatin structure
Date released
39
May, 2022
16
May, 2021
14
September, 2018
12
February, 2023
12
June, 2019
7
August, 2020
5
September, 2017
4
October, 2019
3
August, 2017
3
September, 2020
2
March, 2020
1
November, 2019
Available data
49
bed narrowPeak
47
bigWig
39
zippedFastqFolder
37
bam
35
bigBed narrowPeak
32
fastq
12
bed bed3+
12
bed broadPeak
12
bigBed broadPeak
1
tsv
Organism
118
Homo sapiens
Biosample type
86
primary cell
20
cell line
12
tissue
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
32
eye
29
liver
18
ureter
16
connective tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
69
AMP
49
HPAP
Genome assembly (visualization)
47
GRCh38
46
hg19
Lab
69
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
21
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
118 results
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ATAC-seq
DNase-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
kidney tubule cell
3
+ See 10 more…
cell line
EndoC_BH1
19
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
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