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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ATAC-seq
6
DNase-seq
2
snATAC-seq
Assay category
218
DNA binding
119
DNA accessibility
46
Transcription
4
3D chromatin structure
Date released
163
June, 2019
93
February, 2023
82
August, 2021
39
May, 2022
26
November, 2019
26
October, 2019
21
February, 2021
21
May, 2021
11
May, 2023
10
April, 2020
10
November, 2018
8
January, 2021
8
July, 2019
8
October, 2017
6
August, 2017
4
March, 2019
4
March, 2020
3
January, 2018
1
August, 2022
0
August, 2018
Available data
75
bed narrowPeak
14
bigWig
10
bam
10
bed bed3
9
bed bed3+
9
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedgraph
3
txt
Organism
119
Homo sapiens
Biosample type
101
tissue
primary cell
16
in vitro differentiated cells
2
cell line
Organ
38
artery
38
blood vessel
38
vasculature
35
heart
28
eye
17
pancreas
13
connective tissue
13
epithelium
6
limb
4
bone element
4
skeleton
3
nerve
2
adipose tissue
2
brain
1
kidney
1
pituitary gland
1
skin of body
Project
106
AMP
13
T1D
Genome assembly (visualization)
58
hg19
45
GRCh38
Lab
103
AMP-T2D consortium
13
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
119 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
tissue
coronary artery
35
islet of Langerhans
24
2
retina
15
pigmented layer of retina
12
tibial artery
1
2
+ See 7 more…
in vitro differentiated cells
chondrocyte
5
adipocyte
3
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
+ See 4 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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