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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 331ATAC-seq
  • 181DNase-seq
  • 28snATAC-seq
  • 4FAIRE-seq
Assay category
  • 1592DNA binding
  • 1482Transcription
  • 544DNA accessibility
  • 39DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Date released
  • 163June, 2019
  • 93February, 2023
  • 82August, 2021
  • 39May, 2022
  • 26November, 2019
  • 26October, 2019
  • 21February, 2021
  • 21May, 2021
  • 11May, 2023
  • 10April, 2020
  • 10November, 2018
  • 8January, 2021
  • 8July, 2019
  • 8October, 2017
  • 6August, 2017
  • 4March, 2019
  • 4March, 2020
  • 3January, 2018
  • 1August, 2022
Available data
  • 423bed narrowPeak
  • 275bam
  • 242bigWig
  • 189bigBed narrowPeak
  • 182bed bed3+
  • 180bed broadPeak
  • 178bigBed broadPeak
  • 64xls
  • 42fastq
  • 11bed bed3
  • 7bed bedgraph
  • 4txt
  • 2tsv
Organism
  • 543Homo sapiens
Biosample type
  • 470tissue
  • primary cell
  • 43in vitro differentiated cells
  • 31cell line
Organ
  • 151kidney
  • 102pancreas
  • 74heart
  • 51blood vessel
  • 51vasculature
  • 49artery
  • 44limb
  • 34musculature of body
  • 32brain
  • 32epithelium
  • 31eye
  • 26connective tissue
  • 26liver
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 8adipose tissue
  • 3nerve
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1pituitary gland
  • 1skin of body
Project
  • 513AMP
  • 21T1D
  • 10LungMap
Genome assembly (visualization)
  • 365GRCh38
  • 346hg19
Lab
  • 379AMP-T2D consortium
  • 81Katalin Susztak, Upenn
  • 44Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 5Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 31inconsistent ontology term
  • 2audit script error
  • 1inconsistent replicate
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

544 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney751361
islet of Langerhans68171
coronary artery362
liver202
heart18
in vitro differentiated cells
neural progenitor cell10
adipocyte81
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
Panc11
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