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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
271
ATAC-seq
56
snATAC-seq
10
DNase-seq
1
FAIRE-seq
Assay category
930
DNA binding
689
Transcription
338
DNA accessibility
59
DNA methylation
18
3D chromatin structure
1
DNA sequencing
Date released
100
May, 2020
60
May, 2022
41
February, 2021
34
May, 2021
24
February, 2023
June, 2019
14
September, 2018
13
October, 2019
12
August, 2021
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2019
5
September, 2017
3
September, 2020
2
March, 2020
2
November, 2020
1
January, 2018
Available data
120
bam
102
bigWig
79
bed narrowPeak
61
fastq
60
zippedFastqFolder
33
bigBed narrowPeak
13
tsv
8
bed bed3+
7
bed bed3
7
bed bedgraph
6
bed broadPeak
6
bigBed broadPeak
3
txt
1
tar
Organism
338
Homo sapiens
Biosample type
tissue
264
primary cell
43
in vitro differentiated cells
31
cell line
Organ
97
epithelium
91
pancreas
21
connective tissue
11
blood vessel
11
vasculature
9
blood
9
bodily fluid
8
artery
8
heart
3
kidney
3
vein
2
liver
Project
233
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
148
hg19
82
GRCh38
Lab
223
AMP-T2D consortium
97
Klaus Kaestner, Upenn
13
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
41
inconsistent ontology term
27
audit script error
1
inconsistent replicate
biosample_type!
stem cell
tissue
month_released!
June, 2019
BIOSAMPLE
ASSAY
338 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 40 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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