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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
7
DNase-seq
Assay category
79
DNA binding
26
DNA accessibility
24
Transcription
1
3D chromatin structure
1
DNA methylation
Date released
9
February, 2023
5
February, 2021
5
June, 2019
2
August, 2021
2
November, 2020
2
October, 2019
1
August, 2017
Available data
12
bigWig
11
bed narrowPeak
10
bed bed3+
9
bam
9
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
fastq
Organism
26
Homo sapiens
Biosample type
18
in vitro differentiated cells
8
primary cell
tissue
Organ
111
epithelium
91
pancreas
26
connective tissue
15
vasculature
13
blood vessel
13
kidney
11
heart
9
blood
9
bodily fluid
8
artery
5
brain
4
liver
3
vein
1
eye
1
musculature of body
Project
26
AMP
Genome assembly (visualization)
25
hg19
9
GRCh38
Lab
24
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
files.file_type!
vcf
BIOSAMPLE
ASSAY
26 results
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ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
8
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
cardiac fibroblast
3
osteoblast
2
1
brain pericyte
1
hepatic stellate cell
1
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