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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
3
DNase-seq
Assay category
638
DNA binding
165
Transcription
52
DNA accessibility
8
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Date released
May, 2021
13
February, 2021
12
August, 2021
12
February, 2023
6
November, 2019
6
October, 2019
2
March, 2020
1
August, 2017
January, 2018
Available data
34
bed narrowPeak
30
bam
12
bigWig
7
bed bedgraph
6
bed bed3
5
bed bed3+
5
bigBed narrowPeak
3
txt
2
bed broadPeak
2
bigBed broadPeak
1
fastq
1
tsv
Organism
52
Homo sapiens
Biosample type
468
tissue
275
primary cell
38
in vitro differentiated cells
14
cell line
Organ
18
connective tissue
8
artery
8
blood vessel
8
heart
8
vasculature
4
epithelium
4
pancreas
1
kidney
1
liver
Project
52
AMP
Genome assembly (visualization)
52
hg19
30
GRCh38
Lab
47
AMP-T2D consortium
5
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
1
inconsistent replicate
month_released!
January, 2018
May, 2021
BIOSAMPLE
ASSAY
52 results
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ATAC-seq
DNase-seq
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
3
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
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