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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
ATAC-seq
84
snATAC-seq
22
DNase-seq
5
FAIRE-seq
Assay category
1663
Transcription
1151
DNA binding
571
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Date released
June, 2019
100
May, 2020
99
May, 2022
93
February, 2023
70
August, 2021
36
February, 2021
27
October, 2019
20
November, 2019
16
January, 2021
14
September, 2018
13
May, 2021
11
May, 2023
10
April, 2020
10
August, 2017
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
3
September, 2020
2
January, 2018
2
March, 2020
2
November, 2020
1
August, 2022
Available data
271
bed narrowPeak
172
bam
145
bigWig
101
fastq
64
xls
60
zippedFastqFolder
49
bigBed narrowPeak
19
bed broadPeak
17
bed bed3+
17
bigBed broadPeak
13
tsv
6
bed bed3
1
tar
1
txt
Organism
570
Homo sapiens
Biosample type
307
tissue
264
primary cell
43
in vitro differentiated cells
31
cell line
Organ
149
pancreas
89
epithelium
84
kidney
43
blood vessel
43
vasculature
39
artery
39
heart
28
eye
26
liver
12
bone element
12
limb
12
skeleton
10
connective tissue
10
lung
8
blood
8
bodily fluid
7
adipose tissue
7
brain
3
nerve
3
vein
2
musculature of body
2
spleen
1
pituitary gland
1
skin of body
Project
435
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
231
hg19
224
GRCh38
Lab
311
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
47
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
29
audit script error
13
inconsistent ontology term
month_released!
June, 2019
organ_slims!
ovary
BIOSAMPLE
ASSAY
571 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
68
7
1
1
coronary artery
36
liver
20
2
retina
15
+ See 32 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 40 more…
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