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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ATAC-seq
56
snATAC-seq
30
DNase-seq
1
FAIRE-seq
Assay category
432
Transcription
285
DNA accessibility
279
DNA binding
58
DNA methylation
10
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
27
February, 2021
24
June, 2019
14
September, 2018
13
May, 2021
12
February, 2023
8
January, 2021
7
August, 2020
7
October, 2019
5
August, 2017
5
September, 2017
3
September, 2020
November, 2020
Available data
112
bam
107
bigWig
67
bed narrowPeak
60
fastq
60
zippedFastqFolder
51
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
26
bed bed3+
12
tsv
bed bed3
1
tar
Organism
285
Homo sapiens
Biosample type
465
tissue
285
primary cell
38
in vitro differentiated cells
30
cell line
Organ
91
epithelium
71
pancreas
12
kidney
8
blood
8
bodily fluid
7
vasculature
5
blood vessel
5
brain
5
connective tissue
3
heart
3
liver
3
vein
1
eye
1
musculature of body
Project
180
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
104
hg19
73
GRCh38
Lab
180
AMP-T2D consortium
97
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
15
inconsistent ontology term
files.file_type!
bed bed3
month_released!
November, 2020
BIOSAMPLE
ASSAY
285 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
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