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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ATAC-seq
29
snATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
423
Transcription
258
DNA binding
232
DNA accessibility
52
DNA methylation
10
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
February, 2021
14
September, 2018
13
May, 2021
12
February, 2023
8
January, 2021
7
August, 2020
5
October, 2019
5
September, 2017
4
August, 2017
3
September, 2020
1
November, 2020
Available data
113
bam
107
bigWig
68
bed narrowPeak
60
zippedFastqFolder
52
bigBed narrowPeak
33
fastq
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
12
tsv
1
tar
Organism
232
Homo sapiens
Biosample type
284
tissue
232
primary cell
38
in vitro differentiated cells
21
cell line
Organ
75
epithelium
71
pancreas
8
blood
8
bodily fluid
2
kidney
1
blood vessel
1
connective tissue
1
liver
1
vasculature
1
vein
Project
154
AMP
70
HPAP
8
T1D
Genome assembly (visualization)
85
hg19
48
GRCh38
Lab
154
AMP-T2D consortium
70
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
files.file_type!
bed broadPeak
month_released!
February, 2021
BIOSAMPLE
ASSAY
232 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
Langerhans cell
21
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