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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ATAC-seq
48
snATAC-seq
2
DNase-seq
Assay category
432
Transcription
211
DNA accessibility
58
DNA methylation
53
DNA binding
10
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
27
February, 2021
12
February, 2023
January, 2021
7
August, 2020
3
September, 2020
2
October, 2019
Available data
112
bam
107
bigWig
bed narrowPeak
60
fastq
60
zippedFastqFolder
51
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
26
bed bed3+
12
tsv
1
bed bed3
1
tar
Organism
211
Homo sapiens
Biosample type
211
primary cell
73
tissue
21
in vitro differentiated cells
19
cell line
Organ
51
epithelium
49
pancreas
2
kidney
Project
114
AMP
97
HPAP
Genome assembly (visualization)
45
hg19
10
GRCh38
Lab
114
AMP-T2D consortium
97
Klaus Kaestner, Upenn
Audit category:
27
audit script error
10
inconsistent ontology term
files.file_type!
bed narrowPeak
month_released!
January, 2021
November, 2020
BIOSAMPLE
ASSAY
211 results
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ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
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