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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
30
DNase-seq
1
FAIRE-seq
Assay category
160
DNA accessibility
68
DNA binding
39
Transcription
10
DNA methylation
6
3D chromatin structure
Date released
100
May, 2020
24
June, 2019
13
May, 2021
12
February, 2023
7
October, 2019
2
November, 2020
1
August, 2017
1
February, 2021
Available data
114
bam
98
bigWig
69
bed narrowPeak
52
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
fastq
12
tsv
1
bed bed3
1
tar
Organism
160
Homo sapiens
Biosample type
294
tissue
160
primary cell
32
in vitro differentiated cells
31
cell line
Organ
20
epithelium
12
kidney
8
connective tissue
7
vasculature
5
blood vessel
5
brain
3
heart
3
liver
3
vein
1
eye
1
musculature of body
Project
160
AMP
Genome assembly (visualization)
84
hg19
44
GRCh38
Lab
160
AMP-T2D consortium
60
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
160 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
cardiac fibroblast
3
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