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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
254
Transcription
247
DNA binding
107
DNA accessibility
4
3D chromatin structure
Date released
45
May, 2020
24
June, 2019
14
September, 2018
7
August, 2020
5
August, 2017
5
September, 2017
3
October, 2019
3
September, 2020
1
November, 2020
Available data
114
bam
108
bigWig
69
bed narrowPeak
60
fastq
60
zippedFastqFolder
52
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
12
tsv
bed bed3
1
tar
Organism
107
Homo sapiens
Biosample type
224
tissue
107
primary cell
13
in vitro differentiated cells
5
cell line
Organ
49
epithelium
32
pancreas
10
kidney
7
vasculature
6
connective tissue
5
blood vessel
5
brain
3
heart
3
vein
2
liver
1
eye
1
musculature of body
Project
97
AMP
10
HPAP
Genome assembly (visualization)
90
hg19
59
GRCh38
Lab
97
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
107 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
cardiac fibroblast
3
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