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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 200ATAC-seq
  • 56snATAC-seq
  • 31DNase-seq
  • 1FAIRE-seq
Assay category
  • 436Transcription
  • 288DNA accessibility
  • 279DNA binding
  • 58DNA methylation
  • 103D chromatin structure
Date released
  • 100May, 2020
  • 60May, 2022
  • 28February, 2021
  • 24June, 2019
  • 14September, 2018
  • 13May, 2021
  • 12February, 2023
  • 8January, 2021
  • 7August, 2020
  • 7October, 2019
  • 5August, 2017
  • 5September, 2017
  • 3September, 2020
  • 2November, 2020
Available data
  • 114bam
  • 108bigWig
  • 69bed narrowPeak
  • 60fastq
  • 60zippedFastqFolder
  • 52bigBed narrowPeak
  • 28bed broadPeak
  • 28bigBed broadPeak
  • 27bed bed3+
  • 12tsv
  • 1bed bed3
  • 1tar
Organism
  • 288Homo sapiens
Biosample type
  • 470tissue
  • 288primary cell
  • 43in vitro differentiated cells
  • 31cell line
Organ
  • 91epithelium
  • 71pancreas
  • 12kidney
  • 8blood
  • 8bodily fluid
  • 8connective tissue
  • 7vasculature
  • 5blood vessel
  • 5brain
  • 3heart
  • 3liver
  • 3vein
  • 1eye
  • 1musculature of body
Project
  • 183AMP
  • 97HPAP
  • 8T1D
Genome assembly (visualization)
  • 107hg19
  • 76GRCh38
Lab
  • 183AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 8Kyle Gaulton, UCSD
Audit category:
  • 27audit script error
  • 15inconsistent ontology term
BIOSAMPLE
ASSAY

288 results

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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell48
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
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