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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ATAC-seq
21
snATAC-seq
2
FAIRE-seq
1
DNase-seq
Assay category
968
Transcription
687
DNA binding
191
DNA accessibility
25
DNA methylation
14
3D chromatin structure
Date released
81
February, 2023
August, 2021
20
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
10
April, 2020
8
February, 2021
8
January, 2021
8
July, 2019
3
March, 2019
2
January, 2018
2
March, 2020
1
August, 2017
1
August, 2022
Available data
325
bed narrowPeak
245
bam
224
bigWig
184
bigBed narrowPeak
178
bed broadPeak
bed bed3+
176
bigBed broadPeak
fastq
5
bed bed3
1
tsv
1
txt
Organism
190
Homo sapiens
Biosample type
201
primary cell
191
tissue
30
cell line
26
in vitro differentiated cells
Organ
49
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
12
bone element
12
epithelium
12
kidney
12
skeleton
10
lung
8
limb
4
adipose tissue
4
brain
4
connective tissue
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
Project
160
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
97
hg19
84
GRCh38
Lab
126
AMP-T2D consortium
21
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
11
Katalin Susztak, Upenn
10
Xin Sun, UCSD
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed bed3+
fastq
month_released!
August, 2021
BIOSAMPLE
ASSAY
191 results
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ATAC-seq
snATAC-seq
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
48
7
coronary artery
36
liver
20
retina
15
kidney
11
1
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