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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ATAC-seq
27
snATAC-seq
1
DNase-seq
Assay category
292
DNA binding
283
Transcription
227
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Date released
81
February, 2023
70
August, 2021
20
November, 2019
May, 2022
13
October, 2019
11
May, 2023
10
April, 2020
8
February, 2021
8
January, 2021
4
March, 2019
1
August, 2017
1
August, 2022
Available data
351
bed narrowPeak
227
bam
bigWig
184
bigBed narrowPeak
178
bed broadPeak
176
bed bed3+
176
bigBed broadPeak
64
xls
23
fastq
5
bed bed3
1
tsv
Organism
226
Homo sapiens
Biosample type
227
tissue
120
primary cell
30
in vitro differentiated cells
26
cell line
Organ
81
kidney
48
pancreas
35
artery
35
blood vessel
35
heart
35
vasculature
28
eye
12
bone element
12
epithelium
12
skeleton
10
lung
6
limb
2
adipose tissue
2
brain
2
connective tissue
1
liver
1
pituitary gland
1
skin of body
Project
196
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
140
GRCh38
63
hg19
Lab
111
AMP-T2D consortium
81
Katalin Susztak, Upenn
21
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
lab.title!
Struan F.A. Grant, CHOP
month_released!
May, 2022
BIOSAMPLE
ASSAY
227 results
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ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
islet of Langerhans
47
7
coronary artery
35
retina
15
pigmented layer of retina
12
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