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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
129
ATAC-seq
4
FAIRE-seq
2
snATAC-seq
Assay category
1069
Transcription
865
DNA binding
313
DNA accessibility
38
DNA methylation
6
3D chromatin structure
Date released
163
June, 2019
68
February, 2023
20
November, 2019
20
October, 2019
10
November, 2018
8
February, 2021
8
July, 2019
7
October, 2017
5
August, 2017
2
January, 2018
March, 2020
1
August, 2022
1
May, 2022
Available data
287
bed narrowPeak
226
bam
201
bigWig
184
bigBed narrowPeak
177
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
21
fastq
5
bed bed3
1
txt
Organism
313
Homo sapiens
Biosample type
313
tissue
183
primary cell
33
in vitro differentiated cells
29
cell line
Organ
69
kidney
66
heart
44
limb
43
blood vessel
43
vasculature
41
artery
36
pancreas
34
musculature of body
32
brain
31
eye
18
ureter
12
bone element
12
epithelium
12
skeleton
8
adipose tissue
8
connective tissue
5
liver
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
313
AMP
Genome assembly (visualization)
257
GRCh38
245
hg19
Lab
313
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
lab.title!
Stephen Parker, UMich
month_released!
March, 2020
BIOSAMPLE
ASSAY
313 results
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DNase-seq
ATAC-seq
FAIRE-seq
snATAC-seq
tissue
coronary artery
2
36
islet of Langerhans
1
32
1
1
heart
18
retina
3
15
muscle of arm
17
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