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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ATAC-seq
28
snATAC-seq
13
DNase-seq
4
FAIRE-seq
Assay category
879
DNA binding
773
Transcription
260
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
June, 2019
70
August, 2021
46
February, 2023
39
May, 2022
20
November, 2019
17
October, 2019
11
May, 2023
10
April, 2020
10
November, 2018
February, 2021
8
January, 2021
8
October, 2017
7
July, 2019
5
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
Available data
179
bed narrowPeak
70
bam
64
xls
57
bigWig
41
fastq
19
bigBed narrowPeak
13
bed broadPeak
12
bed bed3+
11
bigBed broadPeak
5
bed bed3
1
tsv
1
txt
Organism
259
Homo sapiens
Biosample type
260
tissue
236
primary cell
39
in vitro differentiated cells
22
cell line
Organ
82
kidney
78
pancreas
40
blood vessel
40
vasculature
artery
39
heart
28
eye
25
liver
12
epithelium
10
lung
7
adipose tissue
7
brain
7
connective tissue
6
limb
4
bone element
4
skeleton
3
nerve
2
musculature of body
2
spleen
1
pituitary gland
1
skin of body
Project
229
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
129
hg19
125
GRCh38
Lab
105
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
1
inconsistent ontology term
month_released!
February, 2021
June, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
260 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
68
7
1
1
liver
20
2
retina
15
pigmented layer of retina
12
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