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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
ATAC-seq
174
DNase-seq
28
snATAC-seq
4
FAIRE-seq
Assay category
1214
Transcription
877
DNA binding
427
DNA accessibility
38
DNA methylation
9
3D chromatin structure
Date released
161
June, 2019
70
August, 2021
46
February, 2023
39
May, 2022
20
November, 2019
17
October, 2019
11
May, 2023
10
April, 2020
10
November, 2018
8
February, 2021
8
January, 2021
8
October, 2017
7
July, 2019
5
August, 2017
4
March, 2019
2
January, 2018
March, 2020
1
August, 2022
Available data
348
bed narrowPeak
239
bam
216
bigWig
180
bigBed narrowPeak
174
bed broadPeak
173
bed bed3+
172
bigBed broadPeak
64
xls
41
fastq
5
bed bed3
1
txt
Organism
426
Homo sapiens
Biosample type
427
tissue
288
primary cell
43
in vitro differentiated cells
21
cell line
Organ
150
kidney
80
pancreas
66
heart
44
limb
43
blood vessel
43
vasculature
artery
34
musculature of body
32
brain
31
eye
25
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
8
adipose tissue
8
connective tissue
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
396
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
294
GRCh38
280
hg19
Lab
272
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
month_released!
March, 2020
organ_slims!
artery
BIOSAMPLE
ASSAY
427 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
66
1
7
1
liver
20
2
heart
18
retina
15
3
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