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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ATAC-seq
174
DNase-seq
28
snATAC-seq
4
FAIRE-seq
Assay category
1053
Transcription
748
DNA binding
444
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Date released
163
June, 2019
81
February, 2023
70
August, 2021
20
November, 2019
19
May, 2022
19
October, 2019
11
May, 2023
10
April, 2020
8
February, 2021
8
January, 2021
8
July, 2019
8
October, 2017
7
November, 2018
4
March, 2019
3
August, 2017
2
January, 2018
2
March, 2020
1
August, 2022
Available data
365
bed narrowPeak
241
bam
200
bigWig
180
bigBed narrowPeak
175
bed broadPeak
174
bed bed3+
173
bigBed broadPeak
64
xls
37
fastq
5
bed bed3
1
tsv
1
txt
Organism
443
Homo sapiens
Biosample type
444
tissue
285
primary cell
43
in vitro differentiated cells
30
cell line
Organ
150
kidney
82
pancreas
66
heart
44
limb
43
blood vessel
43
vasculature
41
artery
34
musculature of body
32
brain
31
eye
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
8
adipose tissue
8
connective tissue
3
nerve
2
spleen
pituitary gland
1
skin of body
Project
413
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
331
GRCh38
264
hg19
Lab
309
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
organ_slims!
liver
pituitary gland
target.investigated_as!
other context
BIOSAMPLE
ASSAY
444 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
67
1
7
1
coronary artery
36
2
heart
18
retina
15
3
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