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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 260ATAC-seq
  • 178DNase-seq
  • 28snATAC-seq
  • 4FAIRE-seq
Assay category
  • 1227Transcription
  • 907DNA binding
  • 470DNA accessibility
  • 38DNA methylation
  • 163D chromatin structure
Date released
  • 163June, 2019
  • 81February, 2023
  • 70August, 2021
  • 39May, 2022
  • 20November, 2019
  • 20October, 2019
  • 11May, 2023
  • 10April, 2020
  • 10November, 2018
  • 8February, 2021
  • 8January, 2021
  • 8July, 2019
  • 8October, 2017
  • 5August, 2017
  • 4March, 2019
  • 2January, 2018
  • 2March, 2020
  • 1August, 2022
Available data
  • 389bed narrowPeak
  • 245bam
  • 224bigWig
  • 184bigBed narrowPeak
  • 178bed broadPeak
  • 177bed bed3+
  • 176bigBed broadPeak
  • 64xls
  • 41fastq
  • 5bed bed3
  • 1tsv
  • 1txt
Organism
  • 469Homo sapiens
Biosample type
  • 470tissue
  • 288primary cell
  • 43in vitro differentiated cells
  • 31cell line
Organ
  • 150kidney
  • 82pancreas
  • 66heart
  • 44limb
  • 43blood vessel
  • 43vasculature
  • 41artery
  • 34musculature of body
  • 32brain
  • 31eye
  • 25liver
  • 18ureter
  • 12bone element
  • 12epithelium
  • 12skeleton
  • 10lung
  • 8adipose tissue
  • 8connective tissue
  • 3nerve
  • 2spleen
  • 1pituitary gland
  • 1skin of body
Project
  • 439AMP
  • 21T1D
  • 10LungMap
Genome assembly (visualization)
  • 335GRCh38
  • 288hg19
Lab
  • 315AMP-T2D consortium
  • 81Katalin Susztak, Upenn
  • 39Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 2audit script error
  • 2inconsistent ontology term
BIOSAMPLE
ASSAY

470 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney751361
islet of Langerhans68171
coronary artery362
liver202
heart18
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