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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356ATAC-seq
  • 84snATAC-seq
  • 3DNase-seq
Assay category
  • 512Transcription
  • 443DNA accessibility
  • 293DNA binding
  • 79DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Date released
  • 105February, 2023
  • 81May, 2022
  • 72August, 2021
  • 55May, 2020
  • 31February, 2021
  • 21May, 2021
  • 18October, 2019
  • 16January, 2021
  • 11May, 2023
  • 10April, 2020
  • 7August, 2020
  • 4March, 2020
  • 3January, 2018
  • 3March, 2019
  • 3September, 2020
  • 1August, 2017
  • 1August, 2022
  • 1October, 2017
Available data
  • 492bed narrowPeak
  • bam
  • 350bigWig
  • 241bigBed narrowPeak
  • 209bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 102fastq
  • 64xls
  • 60zippedFastqFolder
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4txt
  • 1tar
Organism
  • 442Homo sapiens
Biosample type
  • 225tissue
  • 174primary cell
  • 25in vitro differentiated cells
  • 19cell line
Organ
  • 98pancreas
  • 83kidney
  • 81epithelium
  • 35artery
  • 35blood vessel
  • 35heart
  • 35vasculature
  • 28eye
  • 21liver
  • 20connective tissue
  • 10lung
  • 9blood
  • 9bodily fluid
  • 4bone element
  • 4skeleton
  • 3adipose tissue
  • 2brain
  • 2musculature of body
  • 1pituitary gland
  • 1skin of body
Project
  • 307AMP
  • 97HPAP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 123GRCh38
  • 90hg19
Lab
  • 192AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 34Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 5Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 29audit script error
  • 27inconsistent ontology term
files.file_type!
  • bam
BIOSAMPLE
ASSAY

443 results

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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney756
islet of Langerhans307
coronary artery35
liver20
retina15
primary cell
Langerhans cell48
pancreatic alpha cell29
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
pancreatic beta cell16
in vitro differentiated cells
adipocyte8
embryonic stem cell6
chondrocyte5
immature adipocyte2
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH118
GM128781
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