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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
1
DNase-seq
Assay category
546
DNA binding
255
Transcription
36
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Date released
20
May, 2022
9
February, 2021
4
February, 2023
2
August, 2017
1
October, 2019
Available data
36
bed narrowPeak
26
bigWig
16
bam
6
bigBed narrowPeak
5
bed bed3
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
fastq
Organism
36
Homo sapiens
Biosample type
34
tissue
1
cell line
1
primary cell
Organ
166
pancreas
107
epithelium
85
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
24
liver
22
connective tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
6
adipose tissue
5
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
36
AMP
Genome assembly (visualization)
35
hg19
11
GRCh38
Lab
20
Karen Mohlke, UNC
16
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
36 results
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ATAC-seq
DNase-seq
tissue
liver
20
right lobe of liver
1
1
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
+ See 9 more…
cell line
HepG2
1
primary cell
Liver fetal (hepatocyte)
1
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