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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ATAC-seq
11
snATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
479
Transcription
218
DNA binding
134
DNA accessibility
12
DNA methylation
9
3D chromatin structure
Date released
20
November, 2019
18
May, 2022
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
March, 2020
4
October, 2019
3
November, 2018
3
September, 2020
1
August, 2022
Available data
75
bam
74
bed narrowPeak
61
fastq
51
bigWig
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
134
Homo sapiens
Biosample type
82
tissue
32
primary cell
20
cell line
Organ
163
kidney
134
pancreas
84
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
36
brain
35
musculature of body
32
eye
28
connective tissue
28
liver
18
ureter
10
lung
9
blood
9
bodily fluid
8
adipose tissue
8
bone element
8
skeleton
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
103
AMP
21
T1D
10
HPAP
Genome assembly (visualization)
79
hg19
67
GRCh38
Lab
80
AMP-T2D consortium
39
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
files.file_type!
bed bed3
zippedFastqFolder
BIOSAMPLE
ASSAY
134 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
58
7
1
1
body of pancreas
4
4
pancreas
4
2
1
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
EndoC_BH1
19
Panc1
1
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