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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ATAC-seq
11
snATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
479
Transcription
218
DNA binding
162
DNA accessibility
53
DNA methylation
8
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
March, 2019
4
March, 2020
4
October, 2019
3
November, 2018
3
September, 2020
1
August, 2022
Available data
74
bam
74
bed narrowPeak
53
fastq
44
bigWig
39
zippedFastqFolder
32
bigBed narrowPeak
8
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
162
Homo sapiens
Biosample type
78
tissue
64
primary cell
20
cell line
Organ
163
kidney
162
pancreas
116
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
36
brain
35
musculature of body
32
eye
28
connective tissue
28
liver
18
ureter
10
lung
9
blood
9
bodily fluid
8
adipose tissue
8
bone element
8
skeleton
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
99
AMP
42
HPAP
21
T1D
Genome assembly (visualization)
77
hg19
58
GRCh38
Lab
80
AMP-T2D consortium
42
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
files.file_type!
bed bed3
month_released!
August, 2020
March, 2019
BIOSAMPLE
ASSAY
162 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
54
7
1
1
body of pancreas
4
4
pancreas
4
2
1
primary cell
pancreatic alpha cell
30
pancreatic beta cell
21
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
19
Panc1
1
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