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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ATAC-seq
11
snATAC-seq
10
DNase-seq
2
FAIRE-seq
Assay category
484
Transcription
253
DNA binding
176
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2020
7
October, 2019
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
March, 2020
3
November, 2018
3
September, 2020
1
August, 2022
Available data
78
bam
77
bed narrowPeak
61
fastq
54
bigWig
39
zippedFastqFolder
34
bigBed narrowPeak
11
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
2
tsv
Organism
176
Homo sapiens
Biosample type
85
tissue
71
primary cell
20
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
36
brain
35
musculature of body
32
eye
28
connective tissue
28
liver
18
ureter
10
lung
9
blood
9
bodily fluid
8
adipose tissue
8
bone element
8
skeleton
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
106
AMP
49
HPAP
21
T1D
Genome assembly (visualization)
82
hg19
70
GRCh38
Lab
83
AMP-T2D consortium
49
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
176 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
58
7
1
1
body of pancreas
4
4
pancreas
4
2
1
tibial nerve
1
2
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
19
Panc1
1
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