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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ATAC-seq
Assay category
481
Transcription
152
DNA binding
25
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Date released
10
February, 2023
5
February, 2021
3
October, 2019
2
August, 2021
1
August, 2017
1
January, 2018
1
November, 2019
1
November, 2020
1
October, 2017
Available data
18
bigWig
17
bed narrowPeak
14
bam
13
bigBed narrowPeak
12
bed bed3+
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
4
fastq
Organism
25
Homo sapiens
Biosample type
17
in vitro differentiated cells
6
tissue
2
primary cell
Organ
164
pancreas
107
epithelium
85
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
25
connective tissue
24
liver
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
6
adipose tissue
5
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
25
AMP
Genome assembly (visualization)
25
hg19
5
GRCh38
Lab
23
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bed broadPeak
month_released!
November, 2017
BIOSAMPLE
ASSAY
25 results
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ATAC-seq
in vitro differentiated cells
adipocyte
8
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
tissue
adipose tissue
3
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
primary cell
osteoblast
2
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