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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 253ATAC-seq
  • 84snATAC-seq
  • 3DNase-seq
Assay category
  • 1918Transcription
  • 546DNA binding
  • 340DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Date released
  • 100May, 2020
  • 61May, 2022
  • 40February, 2023
  • 31February, 2021
  • 21May, 2021
  • 18October, 2019
  • 16January, 2021
  • 11May, 2023
  • 10April, 2020
  • 7August, 2020
  • 6August, 2021
  • 4March, 2019
  • 4March, 2020
  • 3January, 2018
  • 3September, 2020
  • 2October, 2017
  • 1August, 2017
  • 1August, 2022
  • 1July, 2019
Available data
  • bed narrowPeak
  • 389bam
  • 350bigWig
  • 241bigBed narrowPeak
  • 209bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 102fastq
  • 64xls
  • 60zippedFastqFolder
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4txt
  • 1tar
Organism
  • 339Homo sapiens
Biosample type
  • 219primary cell
  • 81tissue
  • 21in vitro differentiated cells
  • 19cell line
Organ
  • 99pancreas
  • 69epithelium
  • 19kidney
  • 17connective tissue
  • 10lung
  • 9blood
  • 9bodily fluid
  • 4bone element
  • 4brain
  • 4skeleton
  • 2adipose tissue
  • 2musculature of body
  • 1eye
  • 1liver
  • 1pituitary gland
  • 1skin of body
Project
  • 204AMP
  • 97HPAP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 83hg19
  • 26GRCh38
Lab
  • 176AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 34Kyle Gaulton, UCSD
  • 17Katalin Susztak, Upenn
  • 10Xin Sun, UCSD
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
  • 1Struan F.A. Grant, CHOP
Audit category:
  • 30inconsistent ontology term
  • 29audit script error
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

340 results

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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell48
pancreatic alpha cell29
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
pancreatic beta cell16
tissue
islet of Langerhans317
kidney116
lung10
pancreas4
adipose tissue2
in vitro differentiated cells
adipocyte7
chondrocyte5
embryonic stem cell5
immature adipocyte2
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH118
GM128781
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