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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ATAC-seq
Assay category
486
Transcription
219
DNA binding
33
DNA accessibility
8
DNA methylation
5
3D chromatin structure
Date released
11
February, 2021
10
February, 2023
5
October, 2019
2
August, 2021
1
August, 2017
1
January, 2018
1
November, 2019
1
November, 2020
1
October, 2017
Available data
61
bed narrowPeak
58
bam
56
bigWig
49
bigBed narrowPeak
48
bed bed3+
45
bed broadPeak
bigBed broadPeak
6
bed bed3
4
bed bedgraph
4
fastq
Organism
33
Homo sapiens
Biosample type
17
in vitro differentiated cells
14
tissue
2
primary cell
Organ
166
pancreas
107
epithelium
85
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
25
connective tissue
24
liver
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
6
adipose tissue
5
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
33
AMP
Genome assembly (visualization)
33
hg19
13
GRCh38
Lab
31
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bigBed broadPeak
month_released!
April, 2018
BIOSAMPLE
ASSAY
33 results
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ATAC-seq
in vitro differentiated cells
adipocyte
8
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
tissue
adipose tissue
3
adipose tissue(adipose white tissue)
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
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primary cell
osteoblast
2
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