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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
295
ATAC-seq
82
snATAC-seq
3
DNase-seq
Assay category
477
DNA binding
422
Transcription
380
DNA accessibility
80
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
February, 2023
80
August, 2021
79
May, 2022
55
May, 2020
48
February, 2021
29
May, 2021
26
November, 2019
19
October, 2019
16
January, 2021
11
May, 2023
10
April, 2020
4
March, 2019
1
August, 2017
1
August, 2022
1
November, 2020
Available data
427
bed narrowPeak
389
bam
bigWig
241
bigBed narrowPeak
208
bed broadPeak
206
bigBed broadPeak
205
bed bed3+
102
fastq
64
xls
60
zippedFastqFolder
4
bed bedgraph
2
bed bed3
2
tsv
tar
1
txt
Organism
379
Homo sapiens
Biosample type
168
primary cell
165
tissue
26
cell line
21
in vitro differentiated cells
Organ
109
pancreas
83
kidney
59
epithelium
10
lung
8
artery
8
blood
8
blood vessel
8
bodily fluid
8
bone element
8
heart
8
skeleton
8
vasculature
6
connective tissue
6
limb
3
liver
1
adipose tissue
1
brain
1
eye
1
musculature of body
1
pituitary gland
1
skin of body
Project
267
AMP
87
HPAP
16
T1D
10
LungMap
Genome assembly (visualization)
148
GRCh38
96
hg19
Lab
164
AMP-T2D consortium
87
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
34
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
29
audit script error
27
inconsistent ontology term
1
inconsistent replicate
files.file_type!
bigWig
tar
month_released!
February, 2023
January, 2019
BIOSAMPLE
ASSAY
380 results
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ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
monocyte
13
+ See 9 more…
tissue
kidney
75
6
islet of Langerhans
54
5
lung
10
pancreas
4
adipose tissue(adipose white tissue)
1
+ See 10 more…
cell line
EndoC_BH1
17
smooth muscle cell of the coronary artery
8
HepG2
1
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
4
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
See all biosamples
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