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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ATAC-seq
2
DNase-seq
Assay category
71
DNA accessibility
55
Transcription
53
DNA methylation
28
DNA binding
6
3D chromatin structure
Date released
39
May, 2022
16
May, 2021
12
February, 2023
3
October, 2019
1
November, 2019
Available data
54
bed narrowPeak
bigWig
42
bam
40
bigBed narrowPeak
39
zippedFastqFolder
32
fastq
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
1
tar
1
tsv
Organism
71
Homo sapiens
Biosample type
42
primary cell
17
cell line
12
tissue
Organ
121
pancreas
83
kidney
71
epithelium
43
artery
43
blood vessel
43
heart
43
vasculature
28
eye
16
connective tissue
12
bone element
12
skeleton
10
lung
8
blood
8
bodily fluid
6
limb
3
liver
2
adipose tissue
2
brain
1
musculature of body
1
pituitary gland
1
skin of body
Project
39
HPAP
32
AMP
Genome assembly (visualization)
14
hg19
2
GRCh38
Lab
39
Klaus Kaestner, Upenn
32
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
files.file_type!
bigWig
month_released!
August, 2022
organ_slims!
gonad
BIOSAMPLE
ASSAY
71 results
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ATAC-seq
DNase-seq
primary cell
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
Liver fetal (hepatocyte)
1
kidney glomerular epithelial cell
1
+ See 1 more…
cell line
EndoC_BH1
17
tissue
pigmented layer of retina
12
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